multiple sequence alignment and amino acid composition of dreb2 proteins Search Results


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Details of <t> DREB2 </t> genes in sorghum, rice, and Arabidopsis
Multiple Sequence Alignment And Amino Acid Composition Of Dreb2 Proteins, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Details of  DREB2  genes in sorghum, rice, and Arabidopsis

Journal: 3 Biotech

Article Title: DREB2 (dehydration-responsive element-binding protein 2) type transcription factor in sorghum ( Sorghum bicolor ): genome-wide identification, characterization and expression profiles under cadmium and salt stresses

doi: 10.1007/s13205-018-1454-1

Figure Lengend Snippet: Details of DREB2 genes in sorghum, rice, and Arabidopsis

Article Snippet: Multiple sequence alignment and amino acid composition of DREB2 proteins were performed by Bioedit v7.2.5 (Hall 1999 ).

Techniques:

Comparison of amino acid alignments of the DREB2 proteins in Arabidopsis, rice, and sorghum, respectively. The yellow and red rectangles indicate the nuclear localization site (NLS) and AP2 domain structures, respectively. Sequences were aligned by ClustalW; identical and similar residues were shaded as black and grey, respectively, with 100% threshold

Journal: 3 Biotech

Article Title: DREB2 (dehydration-responsive element-binding protein 2) type transcription factor in sorghum ( Sorghum bicolor ): genome-wide identification, characterization and expression profiles under cadmium and salt stresses

doi: 10.1007/s13205-018-1454-1

Figure Lengend Snippet: Comparison of amino acid alignments of the DREB2 proteins in Arabidopsis, rice, and sorghum, respectively. The yellow and red rectangles indicate the nuclear localization site (NLS) and AP2 domain structures, respectively. Sequences were aligned by ClustalW; identical and similar residues were shaded as black and grey, respectively, with 100% threshold

Article Snippet: Multiple sequence alignment and amino acid composition of DREB2 proteins were performed by Bioedit v7.2.5 (Hall 1999 ).

Techniques: Comparison

Phylogenetic tree of 19 DREB2A proteins in three plant species, including Arabidopsis, rice, and sorghum. Tree was constructed by MEGA 7 using maximum-likelihood (ML) method with 1000 bootstraps. The sorghum DREB2 proteins were indicated as red diamonds

Journal: 3 Biotech

Article Title: DREB2 (dehydration-responsive element-binding protein 2) type transcription factor in sorghum ( Sorghum bicolor ): genome-wide identification, characterization and expression profiles under cadmium and salt stresses

doi: 10.1007/s13205-018-1454-1

Figure Lengend Snippet: Phylogenetic tree of 19 DREB2A proteins in three plant species, including Arabidopsis, rice, and sorghum. Tree was constructed by MEGA 7 using maximum-likelihood (ML) method with 1000 bootstraps. The sorghum DREB2 proteins were indicated as red diamonds

Article Snippet: Multiple sequence alignment and amino acid composition of DREB2 proteins were performed by Bioedit v7.2.5 (Hall 1999 ).

Techniques: Construct

Expression levels of DREB2 genes in different five development stages of sorghum, such as seedling, stem elongation, booting, flowering, and dough stages by Genevestigator database

Journal: 3 Biotech

Article Title: DREB2 (dehydration-responsive element-binding protein 2) type transcription factor in sorghum ( Sorghum bicolor ): genome-wide identification, characterization and expression profiles under cadmium and salt stresses

doi: 10.1007/s13205-018-1454-1

Figure Lengend Snippet: Expression levels of DREB2 genes in different five development stages of sorghum, such as seedling, stem elongation, booting, flowering, and dough stages by Genevestigator database

Article Snippet: Multiple sequence alignment and amino acid composition of DREB2 proteins were performed by Bioedit v7.2.5 (Hall 1999 ).

Techniques: Expressing

Expression levels of DREB2 genes in different six anatomical parts of sorghum, such as pith, rind, shoot, roots, leaf, and internode by Genevestigator database

Journal: 3 Biotech

Article Title: DREB2 (dehydration-responsive element-binding protein 2) type transcription factor in sorghum ( Sorghum bicolor ): genome-wide identification, characterization and expression profiles under cadmium and salt stresses

doi: 10.1007/s13205-018-1454-1

Figure Lengend Snippet: Expression levels of DREB2 genes in different six anatomical parts of sorghum, such as pith, rind, shoot, roots, leaf, and internode by Genevestigator database

Article Snippet: Multiple sequence alignment and amino acid composition of DREB2 proteins were performed by Bioedit v7.2.5 (Hall 1999 ).

Techniques: Expressing

Structure overlaps of DREB2 proteins at superimposition mode by CLICK server. The orange and blue 3D structures show the rice and sorghum, respectively. In addition, structure overlaps values (%) were indicated in figure legends

Journal: 3 Biotech

Article Title: DREB2 (dehydration-responsive element-binding protein 2) type transcription factor in sorghum ( Sorghum bicolor ): genome-wide identification, characterization and expression profiles under cadmium and salt stresses

doi: 10.1007/s13205-018-1454-1

Figure Lengend Snippet: Structure overlaps of DREB2 proteins at superimposition mode by CLICK server. The orange and blue 3D structures show the rice and sorghum, respectively. In addition, structure overlaps values (%) were indicated in figure legends

Article Snippet: Multiple sequence alignment and amino acid composition of DREB2 proteins were performed by Bioedit v7.2.5 (Hall 1999 ).

Techniques:

Most conserved five motifs in  DREB2 proteins  in sorghum, rice, and Arabidopsis

Journal: 3 Biotech

Article Title: DREB2 (dehydration-responsive element-binding protein 2) type transcription factor in sorghum ( Sorghum bicolor ): genome-wide identification, characterization and expression profiles under cadmium and salt stresses

doi: 10.1007/s13205-018-1454-1

Figure Lengend Snippet: Most conserved five motifs in DREB2 proteins in sorghum, rice, and Arabidopsis

Article Snippet: Multiple sequence alignment and amino acid composition of DREB2 proteins were performed by Bioedit v7.2.5 (Hall 1999 ).

Techniques: Sequencing

Heat map of cis-regulatory elements in DREB2 genes in sorghum (green: absent and red: present). The cis-regulatory elements were investigated using 1000-bp upstream regions of DREB2 genes

Journal: 3 Biotech

Article Title: DREB2 (dehydration-responsive element-binding protein 2) type transcription factor in sorghum ( Sorghum bicolor ): genome-wide identification, characterization and expression profiles under cadmium and salt stresses

doi: 10.1007/s13205-018-1454-1

Figure Lengend Snippet: Heat map of cis-regulatory elements in DREB2 genes in sorghum (green: absent and red: present). The cis-regulatory elements were investigated using 1000-bp upstream regions of DREB2 genes

Article Snippet: Multiple sequence alignment and amino acid composition of DREB2 proteins were performed by Bioedit v7.2.5 (Hall 1999 ).

Techniques: